IL_5TBW_054

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

5TBW|1|1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5TBW|1|1|U|1218
5TBW|1|1|C|1219
5TBW|1|1|U|1220
5TBW|1|1|A|1221
5TBW|1|1|G|1222
5TBW|1|1|A|1223
5TBW|1|1|C|1224
5TBW|1|1|A|1225
5TBW|1|1|G|1226
*
5TBW|1|1|C|1283
5TBW|1|1|C|1284
5TBW|1|1|G|1285
5TBW|1|1|A|1286
5TBW|1|1|A|1287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 0

60S ribosomal protein L20-A

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A