IL_5TBW_057

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

5TBW|1|1|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

5TBW|1|1|C|1376
5TBW|1|1|G|1377
5TBW|1|1|U|1378
*
5TBW|1|1|A|1428
5TBW|1|1|G|1429
5TBW|1|1|U|1430
5TBW|1|1|G|1431

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AB

60S ribosomal protein L28

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-A