IL_5TBW_061

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5TBW|1|1|G|1444
5TBW|1|1|U|1445
5TBW|1|1|A|1446
5TBW|1|1|G|1447
5TBW|1|1|U|1448
5TBW|1|1|A|1449
5TBW|1|1|G|1450
*
5TBW|1|1|C|2354
5TBW|1|1|G|2355
5TBW|1|1|A|2356
5TBW|1|1|A|2357
5TBW|1|1|A|2358
5TBW|1|1|C|2359

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain l

60S ribosomal protein L4-A

Chain x

60S ribosomal protein L17-A