#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 131-132-123-114-55-106-97-8
1 IL_1NBS_0071NBS0.209407x6 Sarcin-Ricin; G-bulgeB RNase P class BU165G166A167G168U169A170U171*A138A139A140A141A142A143cWWntSHtHHcSHntWHtHScWW
2 IL_4V9F_1064V9F0.189807x6 Sarcin-Ricin; G-bulge9 5S rRNAG75G76A77G78U79A80C81*G101G102A103A104A105U106ncWWtSHtHHcSHtWHtHScWW
3 IL_4V9F_0924V9F0.21580Sarcin-Ricin target in LSU H95; G-bulge0 LSU rRNAA2689U2690A2691G2692U2693A2694C2695*G2700G2701A2702A2703C2704U2705cWWtSHtHHcSHtWHtHScWW
4 IL_5TBW_0615TBW0.164907x6 Sarcin-Ricin; G-bulge1 LSU rRNAG1444U1445A1446G1447U1448A1449G1450*C2354G2355A2356A2357A2358C2359cWWtSHtHHcSHtWHtHScWW
5 IL_8C3A_0658C3A0.157007x6 Sarcin-Ricin; G-bulge (H)1 LSU rRNAG1440U1441A1442G1443U1444A1445G1446*C2332G2333A2334A2335A2336C2337cWWtSHtHHcSHtWHntHScWW
6 IL_8VTW_0078VTW0.000007x6 Sarcin-Ricin; G-bulge (H)1A LSU rRNAU239G240A241G242U243A244G245*C253G254A255A256A257G258cWWtSHtHHcSHtWHtHScWW
7 IL_5J7L_2515J7L0.106607x6 Sarcin-Ricin; G-bulgeDA LSU rRNAC239C240A241G242U243A244G245*C253G254A255A256C257G258cWWtSHtHHcSHtWHtHScWW
8 IL_4V9F_0074V9F0.117007x6 Sarcin-Ricin; G-bulge0 LSU rRNAU210U211A212G213U214A215A216*U224G225A226A227C228G229cWWtSHtHHcSHtWHtHScWW
9 IL_4V9F_0494V9F0.212507x6 Sarcin-Ricin; G-bulge0 LSU rRNAA1367U1368A1369G1370U1371A1372G1373*U2052G2053A2054A2055C2056U2057cWWtSHtHHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAGUAG*CGAAAC2
UGAGUAU*AAAAAA1
GGAGUAC*GGAAAU1
AUAGUAC*GGAACU1
UGAGUAG*CGAAAG1
CCAGUAG*CGAACG1
UUAGUAA*UGAACG1
AUAGUAG*UGAACU1
Non-Watson-Crick part of the motif
SequenceCounts
UAGUA*GAAC3
GAGUA*GAAA2
UAGUA*GAAA2
GAGUA*AAAA1
CAGUA*GAAC1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 7x6 Sarcin-Ricin; G-bulge (6)
  • 7x6 Sarcin-Ricin; G-bulge (H) (2)
  • Sarcin-Ricin target in LSU H95; G-bulge (1)
  • Basepair signature
    cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.08 | Avg 0.17 | Max 0.25
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