IL_5TBW_062

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

5TBW|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|G|1500
5TBW|1|1|U|1501
5TBW|1|1|C|1502
5TBW|1|1|A|1503
5TBW|1|1|A|1504
5TBW|1|1|C|1505
*
5TBW|1|1|G|1513
5TBW|1|1|G|1514
5TBW|1|1|A|1515
5TBW|1|1|C|1516

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L39

Chain x

60S ribosomal protein L17-A

Chain z

60S ribosomal protein L19-A