IL_5TBW_063

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAG*CGAAAG

Length

11 nucleotides

Bulged bases

5TBW|1|1|A|1588, 5TBW|1|1|A|1589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

5TBW|1|1|C|1532
5TBW|1|1|U|1533
5TBW|1|1|A|1534
5TBW|1|1|A|1535
5TBW|1|1|G|1536
*
5TBW|1|1|C|1585
5TBW|1|1|G|1586
5TBW|1|1|A|1587
5TBW|1|1|A|1588
5TBW|1|1|A|1589
5TBW|1|1|G|1590

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AH

60S ribosomal protein L34-A

Chain AK

60S ribosomal protein L37-A

Chain AM

60S ribosomal protein L39

Chain j

60S ribosomal protein L2-A