IL_5TBW_065

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAU*GUUUUC

Length

10 nucleotides

Bulged bases

5TBW|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Multiple bulged bases with near cWW

Broad Annotation

Multiple bulged bases with near cWW

Motif group

IL_58686.2

Basepair signature

cWW-cWW-L-R-cSH-cWW

Number of instances in this motif group

6

Unit IDs

5TBW|1|1|G|1623
5TBW|1|1|G|1624
5TBW|1|1|A|1625
5TBW|1|1|U|1626
*
5TBW|1|1|G|1817
5TBW|1|1|U|1818
5TBW|1|1|U|1819
5TBW|1|1|U|1820
5TBW|1|1|U|1821
5TBW|1|1|C|1822

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27-A

Chain AH

60S ribosomal protein L34-A