Motif IL_58686.2 Version IL_58686.2 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | 3-7 | 4-5 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_065 | 5TBW | 0.6316 | 1 | Multiple bulged bases with near cWW | 1 | LSU rRNA | G | 1817 | U | 1818 | U | 1819 | U | 1820 | C | 1822 | * | G | 1623 | G | 1624 | A | 1625 | U | 1626 | cWW | ncWW | ncWW | cWW | ||
| 2 | IL_8C3A_111 | 8C3A | 0.3578 | 0 | 1 | LSU rRNA | G | 2835 | A | 2836 | U | 2837 | U | 2838 | C | 2839 | * | G | 2795 | G | 2796 | C | 2797 | U | 2798 | cWW | cWWa | ncSH | ncWW | cWW | ||
| 3 | IL_8C3A_473 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | A | 1740 | A | 1741 | A | 1742 | A | 1743 | G | 1744 | * | C | 1631 | G | 1632 | C | 1633 | U | 1634 | cWW | cWWa | ncWW | cWW | |||
| 4 | IL_1J2B_001 | 1J2B | 0.4913 | 0 | C | tRNA(Val) | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW | |||||
| 5 | IL_8DK7_001 | 8DK7 | 0.6583 | 1 | C | RNA (34-MER) | G | 4 | A | 5 | U | 6 | A | 7 | C | 8 | * | G | 27 | A | 29 | G | 30 | C | 31 | ncWW | cWW | ntSH | cSH | cWW | ||
| 6 | IL_8D28_003 | 8D28 | 0.5653 | 1 | B | RNA (33-MER) | G | 4 | A | 5 | U | 6 | A | 7 | C | 8 | * | G | 26 | A | 28 | G | 29 | C | 30 | cWW | cWW | ntSH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAC*GCAGC | 2 |
| GUUUUC*GGAU | 1 |
| GAUUC*GGCU | 1 |
| AAAAG*CGCU | 1 |
| GGAGG*CGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*CAG | 2 |
| UUUU*GA | 1 |
| AUU*GC | 1 |
| AAA*GC | 1 |
| GAG*GC | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Multiple bulged bases with near cWW (1)
- Basepair signature
- cWW-cWW-L-R-cSH-cWW
- Heat map statistics
- Min 0.24 | Avg 0.43 | Max 0.66
Coloring options: