IL_5TBW_067

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.9

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5TBW|1|1|U|1645
5TBW|1|1|G|1646
5TBW|1|1|A|1647
5TBW|1|1|A|1648
5TBW|1|1|U|1649
*
5TBW|1|1|A|1806
5TBW|1|1|G|1807
5TBW|1|1|G|1808
5TBW|1|1|A|1809
5TBW|1|1|A|1810

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27-A

Chain AH

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L2-A