IL_5TBW_073

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGAAUU*GGAGAUG

Length

14 nucleotides

Bulged bases

5TBW|1|1|U|1716, 5TBW|1|1|A|1729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_60192.2

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5TBW|1|1|C|1711
5TBW|1|1|G|1712
5TBW|1|1|G|1713
5TBW|1|1|A|1714
5TBW|1|1|A|1715
5TBW|1|1|U|1716
5TBW|1|1|U|1717
*
5TBW|1|1|G|1727
5TBW|1|1|G|1728
5TBW|1|1|A|1729
5TBW|1|1|G|1730
5TBW|1|1|A|1731
5TBW|1|1|U|1732
5TBW|1|1|G|1733

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27-A

Chain AD

60S ribosomal protein L30

Chain AQ

60S ribosomal protein L43-A

Chain O

40S ribosomal protein S13

Chain z

60S ribosomal protein L19-A