Motif IL_60192.2 Version IL_60192.2 of this group appears in releases 3.80 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_079 | 8C3A | 0.1378 | 2 | Kink-turn (H) | 1 | LSU rRNA | U | 1707 | G | 1708 | G | 1709 | A | 1710 | A | 1711 | U | 1713 | * | G | 1723 | G | 1724 | G | 1726 | A | 1727 | U | 1728 | G | 1729 | cWW | tSH | tSs | ntHS | cWW | |
| 2 | IL_5TBW_073 | 5TBW | 0.0000 | 2 | Kink-turn | 1 | LSU rRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | tSH | ntSH | tSs | tHS | cWW |
| 3 | IL_4V9F_058 | 4V9F | 0.5664 | 1 | Kink-turn | 0 | LSU rRNA | U | 1587 | G | 1588 | G | 1589 | A | 1590 | A | 1591 | G | 1592 | * | C | 1602 | A | 1603 | G | 1605 | A | 1606 | A | 1607 | G | 1608 | cWW | tSH | tSH | tSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAAUU*GGAGAUG | 1 |
| CGGAAUU*GGAGAUG | 1 |
| UGGAAG*CAGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAU*GAGAU | 2 |
| GGAA*AGGAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (2)
- Kink-turn (H) (1)
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.28 | Max 0.57
Coloring options: