IL_5TBW_074

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5TBW|1|1|A|1883
5TBW|1|1|A|1884
5TBW|1|1|U|1885
5TBW|1|1|A|1886
5TBW|1|1|A|1887
5TBW|1|1|U|1888
5TBW|1|1|G|1889
*
5TBW|1|1|C|2346
5TBW|1|1|U|2347
5TBW|1|1|A|2348
5TBW|1|1|U|2349

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L31-A

Chain k

60S ribosomal protein L3

Chain x

60S ribosomal protein L17-A