Motif IL_49460.3 Version IL_49460.3 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 5-10 | 6-10 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NDB_002 | 3NDB | 0.4425 | 0 | M | SRP RNA | G | 247 | G | 248 | G | 249 | G | 250 | U | 251 | G | 252 | C | 253 | * | G | 128 | U | 129 | C | 130 | C | 131 | cWW | ncWS | cWW | |
| 2 | IL_8C3A_080 | 8C3A | 0.0000 | 0 | 1 | LSU rRNA | A | 1879 | A | 1880 | U | 1881 | A | 1882 | A | 1883 | U | 1884 | G | 1885 | * | C | 2324 | U | 2325 | A | 2326 | U | 2327 | cWW | tHS | cWW | |
| 3 | IL_5TBW_074 | 5TBW | 0.0876 | 0 | 1 | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1886 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | U | 2349 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUAAUG*CUAU | 2 |
| GGGGUGC*GUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 2 |
| GGGUG*UC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.22 | Max 0.46
Coloring options: