IL_5TBW_085

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5TBW|1|1|A|2242, 5TBW|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove outside cWW, minor groove, intercalation pocket

Broad Annotation

Major groove outside cWW, minor groove, intercalation pocket

Motif group

IL_92880.1

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

5TBW|1|1|U|2200
5TBW|1|1|G|2201
*
5TBW|1|1|U|2241
5TBW|1|1|A|2242
5TBW|1|1|A|2243
5TBW|1|1|A|2244

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L2-A