IL_5TBW_099

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5TBW|1|1|C|2666
5TBW|1|1|A|2667
5TBW|1|1|U|2668
*
5TBW|1|1|A|2686
5TBW|1|1|G|2687
5TBW|1|1|U|2688
5TBW|1|1|A|2689
5TBW|1|1|G|2690

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain i

Suppressor protein STM1

Chain m

60S ribosomal protein L5

Chain s

60S ribosomal protein L11-B