Motif IL_71241.2 Version IL_71241.2 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	1-8	2-7	3-6	5-6
1	IL_7A0S_080	7A0S	0.3706	Isolated tHS basepair with bulges	X	LSU rRNA	U	2296	G	2297	U	2298	A	2299	G	2300	*	C	2276	A	2277	A	2278	cWW	ntSH		cWW
2	IL_5TBW_099	5TBW	0.3080	Isolated tHS basepair with bulges	1	LSU rRNA	A	2686	G	2687	U	2688	A	2689	G	2690	*	C	2666	A	2667	U	2668	cWW	tSH		cWW
3	IL_8C3A_108	8C3A	0.3133	Isolated tHS basepair with bulges (H)	1	LSU rRNA	A	2658	G	2659	U	2660	A	2661	G	2662	*	C	2638	A	2639	U	2640	cWW	tSH		cWW
4	IL_4WF9_086	4WF9	0.2004	Isolated tHS basepair with bulges	X	LSU rRNA	C	2344	A	2345	U	2346	A	2347	G	2348	*	C	2324	A	2325	G	2326	cWW	tSH		cWW
5	IL_4V9F_080	4V9F	0.0000	Isolated tHS basepair with bulges	0	LSU rRNA	C	2351	G	2352	A	2353	A	2354	G	2355	*	C	2331	A	2332	G	2333	cWW	tSH		cWW
6	IL_8VTW_087	8VTW	0.1719	Isolated tHS basepair with bulges (H)	1A	LSU rRNA	C	2317	G	2318	G	2319	A	2320	G	2321	*	C	2297	A	2298	G	2299	cWW	tSH		cWW
7	IL_5J7L_332	5J7L	0.7080		DA	LSU rRNA	A	2317	G	2318	G	2319	U	2320	U	2321	*	A	2297	A	2298	U	2299	cWW	tSH	ntSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUAG*CAU	2
UGUAG*CAA	1
CAUAG*CAG	1
CGAAG*CAG	1
CGGAG*CAG	1
AGGUU*AAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUA*A	3
AUA*A	1
GAA*A	1
GGA*A	1
GGU*A	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated tHS basepair with bulges (4)
Isolated tHS basepair with bulges (H) (2)
(1)
Basepair signature: cWW-cWW-tSH-cWW-L-L
Heat map statistics: Min 0.14 | Avg 0.40 | Max 0.97

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