IL_5TBW_100

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5TBW|1|1|U|2718
5TBW|1|1|U|2719
5TBW|1|1|G|2720
5TBW|1|1|A|2721
*
5TBW|1|1|U|2735
5TBW|1|1|A|2736
5TBW|1|1|C|2737
5TBW|1|1|A|2738

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AC

60S ribosomal protein L29

Chain AP

60S ribosomal protein L42-A

Chain m

60S ribosomal protein L5

Chain y

60S ribosomal protein L18-A