IL_5TBW_116

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAGUAC*GGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5TBW|1|1|C|3018
5TBW|1|1|U|3019
5TBW|1|1|U|3020
5TBW|1|1|A|3021
5TBW|1|1|G|3022
5TBW|1|1|U|3023
5TBW|1|1|A|3024
5TBW|1|1|C|3025
*
5TBW|1|1|G|3030
5TBW|1|1|G|3031
5TBW|1|1|A|3032
5TBW|1|1|A|3033
5TBW|1|1|C|3034
5TBW|1|1|A|3035
5TBW|1|1|G|3036

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain k

60S ribosomal protein L3

Chain q

60S ribosomal protein L9-A