IL_5TBW_117

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

5TBW|1|1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_37712.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5TBW|1|1|U|3047
5TBW|1|1|A|3048
5TBW|1|1|A|3049
5TBW|1|1|U|3050
5TBW|1|1|U|3051
*
5TBW|1|1|A|3091
5TBW|1|1|C|3092
5TBW|1|1|C|3093
5TBW|1|1|A|3094

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain 7

60S ribosomal protein L24-A

Chain k

60S ribosomal protein L3