Motif IL_14592.1 Version IL_14592.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_047 | 7A0S | 0.2001 | 1 | C-loop | X | LSU rRNA | G | 1332 | G | 1333 | A | 1334 | A | 1335 | G | 1336 | * | C | 1344 | C | 1346 | cWW | cWS | cWW | |
| 2 | IL_4WF9_050 | 4WF9 | 0.0000 | 1 | Major groove minor groove platform with tHH | X | LSU rRNA | G | 1356 | G | 1357 | A | 1358 | A | 1359 | G | 1360 | * | C | 1368 | C | 1370 | cWW | tHH | cWS | cWW |
| 3 | IL_5TBW_117 | 5TBW | 0.2452 | 2 | Major groove minor groove platform with tHH | 1 | LSU rRNA | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | * | A | 3091 | A | 3094 | cWW | tHH | cWW | |
| 4 | IL_8C3A_126 | 8C3A | 0.2571 | 2 | Major groove minor groove platform with tHH | 1 | LSU rRNA | U | 3019 | A | 3020 | A | 3021 | U | 3022 | U | 3023 | * | A | 3063 | A | 3066 | cWW | ntHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAG*CGC | 2 |
| UAAUU*ACCA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*G | 2 |
| AAU*CC | 2 |
- Annotations
-
- Major groove minor groove platform with tHH (3)
- C-loop (1)
- Basepair signature
- cWW-tHH-cWW-L-L
- Heat map statistics
- Min 0.13 | Avg 0.19 | Max 0.37
Coloring options: