IL_5TBW_120

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

5TBW|1|1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

5TBW|1|1|A|3103
5TBW|1|1|U|3104
5TBW|1|1|U|3105
5TBW|1|1|A|3106
5TBW|1|1|U|3107
*
5TBW|1|1|A|3127
5TBW|1|1|G|3128
5TBW|1|1|A|3129
5TBW|1|1|A|3130
5TBW|1|1|U|3131

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A

Chain w

60S ribosomal protein L16-A