IL_5TBW_132

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

5TBW|1|1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|G|3328
5TBW|1|1|U|3329
5TBW|1|1|A|3330
*
5TBW|1|1|U|3373
5TBW|1|1|U|3374
5TBW|1|1|A|3375
5TBW|1|1|A|3376
5TBW|1|1|G|3377
5TBW|1|1|C|3378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain AE

60S ribosomal protein L31-A

Chain k

60S ribosomal protein L3