IL_5TBW_213

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5TBW|1|A|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_213 not in the Motif Atlas

Geometric match to IL_4V88_452

Geometric discrepancy: 0.0872

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5TBW|1|A|C|1280
5TBW|1|A|G|1281
*
5TBW|1|A|C|1426
5TBW|1|A|A|1427
5TBW|1|A|G|1428

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S3

Chain R

40S ribosomal protein S16-A

Chain V

40S ribosomal protein S20

Chain e

40S ribosomal protein S29-A

Chain i

Suppressor protein STM1