IL_5TBW_272

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5TBW|1|AR|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_272 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.2212

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5TBW|1|AR|C|977
5TBW|1|AR|G|978
5TBW|1|AR|U|979
5TBW|1|AR|A|980
5TBW|1|AR|U|981
*
5TBW|1|AR|A|1102
5TBW|1|AR|A|1103
5TBW|1|AR|G|1104

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L7-A

Chain CS

60S ribosomal protein L18-A

Chain DD

60S ribosomal protein L29