IL_5TBW_292

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5TBW|1|AR|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_292 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1332

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5TBW|1|AR|G|1262
5TBW|1|AR|A|1263
5TBW|1|AR|G|1264
5TBW|1|AR|U|1265
5TBW|1|AR|G|1266
*
5TBW|1|AR|C|1275
5TBW|1|AR|U|1276
5TBW|1|AR|C|1277

Current chains

Chain AR

25S ribosomal RNA

Nearby chains