IL_5TBW_349

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

5TBW|1|AR|A|3142, 5TBW|1|AR|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_349 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0475

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5TBW|1|AR|C|3004
5TBW|1|AR|A|3005
5TBW|1|AR|A|3006
5TBW|1|AR|U|3007
*
5TBW|1|AR|A|3139
5TBW|1|AR|G|3140
5TBW|1|AR|A|3141
5TBW|1|AR|A|3142
5TBW|1|AR|C|3143
5TBW|1|AR|G|3144

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CQ

60S ribosomal protein L16-A