IL_5TBW_411

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_411 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.0652

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5TBW|1|sR|A|550
5TBW|1|sR|G|551
5TBW|1|sR|G|552
5TBW|1|sR|G|553
5TBW|1|sR|C|554
5TBW|1|sR|A|555
5TBW|1|sR|A|556
5TBW|1|sR|G|557
*
5TBW|1|sR|C|587
5TBW|1|sR|U|588

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A