IL_5TBW_419

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_419 not in the Motif Atlas

Homologous match to IL_4V88_421

Geometric discrepancy: 0.0892

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5TBW|1|sR|G|703
5TBW|1|sR|C|704
5TBW|1|sR|U|705
5TBW|1|sR|A|706
5TBW|1|sR|A|707
5TBW|1|sR|C|708
*
5TBW|1|sR|G|730
5TBW|1|sR|C|731
5TBW|1|sR|G|732
5TBW|1|sR|A|733
5TBW|1|sR|A|734
5TBW|1|sR|C|735

Current chains

Chain sR

18S ribosomal RNA

Nearby chains