IL_5TBW_437

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_437 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0454

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5TBW|1|sR|G|1111
5TBW|1|sR|G|1112
5TBW|1|sR|A|1113
5TBW|1|sR|G|1114
5TBW|1|sR|U|1115
5TBW|1|sR|A|1116
5TBW|1|sR|U|1117
5TBW|1|sR|G|1118
*
5TBW|1|sR|U|1129
5TBW|1|sR|G|1130
5TBW|1|sR|A|1131
5TBW|1|sR|A|1132
5TBW|1|sR|A|1133
5TBW|1|sR|C|1134

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain DP

60S ribosomal protein L41-A

Chain d3

40S ribosomal protein S23-A