IL_5TBW_475

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUA*UAAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28976.1

Basepair signature

cWW-L-cWW-cSH-R-cWW

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|C|2889
5TBW|1|1|A|2890
5TBW|1|1|U|2891
5TBW|1|1|A|2892
*
5TBW|1|1|U|2909
5TBW|1|1|A|2910
5TBW|1|1|A|2911
5TBW|1|1|G|2912
5TBW|1|1|C|2913
5TBW|1|1|G|2914

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain k

60S ribosomal protein L3

Chain q

60S ribosomal protein L9-A