IL_5TBW_477

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCC*GUGCU

Length

9 nucleotides

Bulged bases

5TBW|1|A|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_477 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.3304

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5TBW|1|A|G|273
5TBW|1|A|G|274
5TBW|1|A|C|275
5TBW|1|A|C|276
*
5TBW|1|A|G|279
5TBW|1|A|U|280
5TBW|1|A|G|281
5TBW|1|A|C|282
5TBW|1|A|U|283

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6-A