IL_5TBW_496

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGA*UCUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_496 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.2624

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5TBW|1|sR|C|709
5TBW|1|sR|U|710
5TBW|1|sR|U|711
5TBW|1|sR|G|712
5TBW|1|sR|A|713
*
5TBW|1|sR|U|725
5TBW|1|sR|C|726
5TBW|1|sR|U|727
5TBW|1|sR|U|728
5TBW|1|sR|G|729

Current chains

Chain sR

18S ribosomal RNA

Nearby chains