IL_5TBW_498

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGG*CACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_498 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.3719

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5TBW|1|sR|C|1177
5TBW|1|sR|G|1178
5TBW|1|sR|G|1179
*
5TBW|1|sR|C|1459
5TBW|1|sR|A|1460
5TBW|1|sR|C|1461
5TBW|1|sR|G|1462

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain c8

40S ribosomal protein S18-A

Chain sM

Suppressor protein STM1