IL_5TBW_502

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGGAGUGUGUAACAACUCAC

Length

39 nucleotides

Bulged bases

5TBW|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99396.1

Basepair signature

cWW-R-L-R-L-cHW-L-R-L-R-L-R-L-R-tWW-R-L-R-L-R-L-L-cWW-R-R-L-R-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

5TBW|1|1|G|1230
5TBW|1|1|A|1231
5TBW|1|1|C|1232
5TBW|1|1|G|1233
5TBW|1|1|G|1234
5TBW|1|1|U|1235
5TBW|1|1|G|1236
5TBW|1|1|G|1237
5TBW|1|1|C|1238
*
5TBW|1|1|G|1250
5TBW|1|1|A|1251
5TBW|1|1|A|1252
5TBW|1|1|U|1253
5TBW|1|1|C|1254
5TBW|1|1|C|1255
5TBW|1|1|G|1256
5TBW|1|1|C|1257
5TBW|1|1|U|1258
5TBW|1|1|A|1259
5TBW|1|1|A|1260
5TBW|1|1|G|1261
5TBW|1|1|G|1262
5TBW|1|1|A|1263
5TBW|1|1|G|1264
5TBW|1|1|U|1265
5TBW|1|1|G|1266
5TBW|1|1|U|1267
5TBW|1|1|G|1268
5TBW|1|1|U|1269
5TBW|1|1|A|1270
5TBW|1|1|A|1271
5TBW|1|1|C|1272
5TBW|1|1|A|1273
5TBW|1|1|A|1274
5TBW|1|1|C|1275
5TBW|1|1|U|1276
5TBW|1|1|C|1277
5TBW|1|1|A|1278
5TBW|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains