Motif IL_99396.1 Version IL_99396.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | break | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 1-38 | 2-38 | 5-35 | 7-33 | 8-12 | 11-30 | 11-31 | 13-28 | 14-36 | 15-16 | 16-27 | 17-26 | 18-26 | 30-31 | ||||||||||||||||||||||||||||||||||||||
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1 | IL_5TBW_502 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | C | 1255 | G | 1256 | C | 1257 | U | 1258 | A | 1259 | A | 1260 | G | 1261 | G | 1262 | A | 1263 | G | 1264 | U | 1265 | G | 1266 | U | 1267 | G | 1268 | U | 1269 | A | 1270 | A | 1271 | C | 1272 | A | 1273 | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | C | 1279 | * | G | 1230 | A | 1231 | C | 1232 | G | 1233 | G | 1234 | U | 1235 | G | 1237 | C | 1238 | ncWW | ncWS | ncWW | ncWW | tWW | ncSs | ntSs | cWW | cHW | ncSH | cWw | ncWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAUCCGCUAAGGAGUGUGUAACAACUCAC*GACGGUGGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAUCCGCUAAGGAGUGUGUAACAACUCA*ACGGUGG | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-R-L-R-L-cHW-L-R-L-R-L-R-L-R-tWW-R-L-R-L-R-L-L-cWW-R-R-L-R-R-L-R-L-R-L-R
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: