IL_5TCU_001

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAA*UA

Length

6 nucleotides

Bulged bases

5TCU|1|A|G|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_001 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2391

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

5TCU|1|A|U|31
5TCU|1|A|G|32
5TCU|1|A|A|33
5TCU|1|A|A|34
*
5TCU|1|A|U|560
5TCU|1|A|A|561

Current chains

Chain A

16S RRNA

Nearby chains

Chain S3

30S ribosomal protein S12