IL_5TCU_003

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUAAU*AGG

Length

9 nucleotides

Bulged bases

5TCU|1|A|C|49, 5TCU|1|A|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_003 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2286

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5TCU|1|A|C|48
5TCU|1|A|C|49
5TCU|1|A|U|50
5TCU|1|A|A|51
5TCU|1|A|A|52
5TCU|1|A|U|53
*
5TCU|1|A|A|367
5TCU|1|A|G|368
5TCU|1|A|G|369

Current chains

Chain A

16S RRNA

Nearby chains

Chain S3

30S ribosomal protein S12