IL_5TCU_016

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

5TCU|1|A|U|420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_016 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.4872

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5TCU|1|A|U|417
5TCU|1|A|G|418
5TCU|1|A|A|419
5TCU|1|A|U|420
5TCU|1|A|G|421
5TCU|1|A|A|422
5TCU|1|A|A|423
5TCU|1|A|G|424
*
5TCU|1|A|C|435
5TCU|1|A|G|436
5TCU|1|A|U|437
5TCU|1|A|A|438
5TCU|1|A|A|439
5TCU|1|A|A|440
5TCU|1|A|A|441

Current chains

Chain A

16S RRNA

Nearby chains

Chain SC

30S ribosomal protein S4