IL_5TCU_017
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- 5TCU|1|A|A|517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_017 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.2682
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
5TCU|1|A|C|512
5TCU|1|A|G|513
5TCU|1|A|G|514
5TCU|1|A|C|515
5TCU|1|A|U|516
5TCU|1|A|A|517
5TCU|1|A|A|518
5TCU|1|A|C|519
*
5TCU|1|A|G|548
5TCU|1|A|G|549
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain S3
- 30S ribosomal protein S12
- Chain SC
- 30S ribosomal protein S4
Coloring options: