IL_5TCU_020

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUAA*UGGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_020 not in the Motif Atlas

Geometric match to IL_1J2B_001

Geometric discrepancy: 0.3699

The information below is about IL_1J2B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69301.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

5TCU|1|A|U|600
5TCU|1|A|U|601
5TCU|1|A|U|602
5TCU|1|A|A|603
5TCU|1|A|A|604
*
5TCU|1|A|U|652
5TCU|1|A|G|653
5TCU|1|A|G|654
5TCU|1|A|A|655

Current chains

Chain A

16S RRNA

Nearby chains

Chain S8

30S ribosomal protein S17

Chain SF

30S ribosomal protein S8