IL_5TCU_031

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_031 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1534

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5TCU|1|A|C|787
5TCU|1|A|A|788
5TCU|1|A|A|789
5TCU|1|A|A|790
5TCU|1|A|C|791
*
5TCU|1|A|G|807
5TCU|1|A|G|808
5TCU|1|A|U|809
5TCU|1|A|A|810
5TCU|1|A|G|811

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain S2

30S ribosomal protein S11