IL_5TCU_039

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5TCU|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_039 not in the Motif Atlas

Homologous match to IL_5J7L_046

Geometric discrepancy: 0.2026

The information below is about IL_5J7L_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5TCU|1|A|G|1060
5TCU|1|A|U|1061
5TCU|1|A|G|1062
*
5TCU|1|A|C|1219
5TCU|1|A|C|1220

Current chains

Chain A

16S RRNA

Nearby chains

Chain S5

30S ribosomal protein S14 type Z