IL_5TCU_055

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_055 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1852

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5TCU|1|A|A|1427
5TCU|1|A|G|1428
5TCU|1|A|A|1429
5TCU|1|A|G|1430
*
5TCU|1|A|U|1493
5TCU|1|A|G|1494
5TCU|1|A|A|1495
5TCU|1|A|U|1496

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain S3

30S ribosomal protein S12