IL_5TCU_057

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_057 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2206

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

5TCU|1|A|C|1440
5TCU|1|A|C|1441
5TCU|1|A|C|1442
*
5TCU|1|A|G|1482
5TCU|1|A|G|1483

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain L1

50S ribosomal protein L19

Chain LN

50S ribosomal protein L14