IL_5TCU_070

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_070 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1298

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5TCU|1|B|C|241
5TCU|1|B|U|242
5TCU|1|B|U|243
5TCU|1|B|A|244
5TCU|1|B|G|245
5TCU|1|B|U|246
5TCU|1|B|A|247
5TCU|1|B|G|248
*
5TCU|1|B|C|256
5TCU|1|B|G|257
5TCU|1|B|A|258
5TCU|1|B|A|259
5TCU|1|B|A|260
5TCU|1|B|C|261
5TCU|1|B|G|262

Current chains

Chain B

23S RRNA

Nearby chains

Chain LH

50S ribosomal protein L35

Chain LO

50S ribosomal protein L15