IL_5TCU_084

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUU*GGAC

Length

7 nucleotides

Bulged bases

5TCU|1|B|G|774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_084 not in the Motif Atlas

Geometric match to IL_4V88_467

Geometric discrepancy: 0.2456

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5TCU|1|B|G|746
5TCU|1|B|U|747
5TCU|1|B|U|748
*
5TCU|1|B|G|773
5TCU|1|B|G|774
5TCU|1|B|A|775
5TCU|1|B|C|776

Current chains

Chain B

23S RRNA

Nearby chains

Chain L2

50S ribosomal protein L2