IL_5TCU_091

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

5TCU|1|B|U|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_091 not in the Motif Atlas

Homologous match to IL_4WF9_030

Geometric discrepancy: 0.5002

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5TCU|1|B|A|897
5TCU|1|B|U|898
*
5TCU|1|B|A|969
5TCU|1|B|U|970
5TCU|1|B|U|971

Current chains

Chain B

23S RRNA

Nearby chains

Chain L9

50S ribosomal protein L27

Chain LD

50S ribosomal protein L30