IL_5TCU_100

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_100 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1509

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5TCU|1|B|U|1062
5TCU|1|B|U|1063
5TCU|1|B|A|1064
5TCU|1|B|A|1065
5TCU|1|B|G|1066
5TCU|1|B|U|1067
5TCU|1|B|G|1068
*
5TCU|1|B|C|1184
5TCU|1|B|U|1185
5TCU|1|B|A|1186
5TCU|1|B|A|1187
5TCU|1|B|A|1188

Current chains

Chain B

23S RRNA

Nearby chains

Chain LI

50S ribosomal protein L36

Chain LM

50S ribosomal protein L13