IL_5TCU_108
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAGUAG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_108 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.1401
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
5TCU|1|B|G|1300
5TCU|1|B|U|1301
5TCU|1|B|G|1302
5TCU|1|B|A|1303
5TCU|1|B|G|1304
5TCU|1|B|U|1305
5TCU|1|B|A|1306
5TCU|1|B|G|1307
*
5TCU|1|B|U|2038
5TCU|1|B|G|2039
5TCU|1|B|A|2040
5TCU|1|B|A|2041
5TCU|1|B|A|2042
5TCU|1|B|U|2043
5TCU|1|B|C|2044
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain L5
- 50S ribosomal protein L22
- Chain LE
- 50S ribosomal protein L32
- Chain LJ
- 50S ribosomal protein L4
Coloring options: