IL_5TCU_115

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAGG*CUGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_115 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3627

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5TCU|1|B|G|1518
5TCU|1|B|U|1519
5TCU|1|B|A|1520
5TCU|1|B|A|1521
5TCU|1|B|G|1522
5TCU|1|B|G|1523
*
5TCU|1|B|C|1557
5TCU|1|B|U|1558
5TCU|1|B|G|1559
5TCU|1|B|A|1560
5TCU|1|B|G|1561
5TCU|1|B|C|1562

Current chains

Chain B

23S RRNA

Nearby chains